Sequence Similarity Clusters for the Entities in PDB 4J70

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 309 8
95 % 72 309 19 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 72 309 22
70 % 72 309 32
50 % 72 309 68
40 % 82 366 43
30 % 493 2273 2
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 305 17
95 % 72 305 30 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 72 305 32
70 % 72 305 41
50 % 72 305 73
40 % 82 360 48
30 % 82 362 49
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 42 182 76
95 % 59 247 61 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 59 247 67
70 % 80 312 28
50 % 80 316 62
40 % 80 316 80
30 % 83 339 30
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 62 273 21
95 % 72 306 27 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 72 306 29
70 % 72 306 39
50 % 72 306 71
40 % 72 328 79
30 % 72 332 79
Entity #13 | Chains: M,a
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 306 14
95 % 72 306 28 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 72 306 31
70 % 72 306 37
50 % 72 306 72
40 % 72 306 89
30 % 72 306 89
Entity #14 | Chains: N,b
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 306 13
95 % 72 306 26 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 72 306 28
70 % 72 306 38
50 % 72 306 70
40 % 72 310 86
30 % 72 310 88
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 258 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 309 9
95 % 72 309 21 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.3
PDBFlex
90 % 72 309 25
70 % 72 309 34
50 % 82 364 37
40 % 82 366 45
30 % 494 2273 2
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 309 10
95 % 72 309 20 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 72 309 23
70 % 72 309 33
50 % 82 363 38
40 % 85 393 17
30 % 495 2273 2
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 260 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 71 308 12
95 % 72 309 24 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 72 310 21
70 % 72 310 31
50 % 82 365 36
40 % 82 365 46
30 % 496 2273 2
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 234 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 307 16
95 % 72 309 23 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 72 309 24
70 % 72 309 35
50 % 72 309 69
40 % 72 309 88
30 % 497 2273 2
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 288 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 69 264 25
95 % 69 264 43 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.2
PDBFlex
90 % 69 264 48
70 % 69 264 59
50 % 69 264 93
40 % 69 264 107
30 % 69 264 109
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 252 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 309 11
95 % 72 309 22 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 72 309 26
70 % 72 309 36
50 % 82 361 41
40 % 82 367 44
30 % 498 2273 2
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 63 240 41
95 % 69 285 34 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 71 296 34
70 % 71 296 44
50 % 82 339 53
40 % 82 339 71
30 % 82 339 72
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 72 306 15
95 % 72 306 29 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 72 306 30
70 % 72 306 40
50 % 82 357 43
40 % 82 363 47
30 % 82 363 48

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures