Sequence Similarity Clusters for the Entities in PDB 4J6R

Entity #1 | Chains: G
Envelope glycoprotein gp160 protein, length: 359 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 52357
95 % 1 2 37400 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 1 2 35726
70 % 2 101 318
50 % 2 101 377
40 % 2 101 395
30 % 2 102 404
Entity #2 | Chains: H
HEAVY CHAIN OF ANTIBODY VRC23 protein, length: 224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 74619
95 % 1 1 53104
90 % 1 1 50199
70 % 97 2784 1
50 % 107 2927 1
40 % 107 2927 1
30 % 207 5855 1
Entity #3 | Chains: L
LIGHT CHAIN OF ANTIBODY VRC23 protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79402
95 % 1 1 53103
90 % 1 1 50198
70 % 74 2273 2
50 % 97 2886 2
40 % 97 2886 2
30 % 208 5855 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures