Sequence Similarity Clusters for the Entities in PDB 4J4P

Entity #1 | Chains: A,B
Ig epsilon chain C region protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 7 5446
95 % 6 10 3990 Flexibility: High
Max RMSD: 24.3, Avg RMSD: 14.8
PDBFlex
90 % 6 10 4156
70 % 6 10 4134
50 % 6 10 4033
40 % 6 10 3986
30 % 6 10 3896
Entity #2 | Chains: C,H
Immunoglobulin G Fab Fragment Heavy Chain protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51950
95 % 1 1 35024 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.6
PDBFlex
90 % 4 7 6459
70 % 2331 3036 1
50 % 4852 6328 1
40 % 4863 6341 1
30 % 4898 6387 1
Entity #3 | Chains: D,L
Immunoglobulin G Fab Fragment Light Chain protein, length: 235 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51949
95 % 1 1 35023 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.7
PDBFlex
90 % 101 142 154
70 % 455 648 7
50 % 4853 6328 1
40 % 4864 6341 1
30 % 4899 6387 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures