Sequence Similarity Clusters for the Entities in PDB 4J38

Entity #1 | Chains: A
Outer surface protein E protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 55865
95 % 1 2 39454
90 % 1 2 31265
70 % 5 6 8901
50 % 5 6 8513
40 % 5 6 8164
30 % 5 6 7623
Entity #2 | Chains: B
Complement factor H protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 55889
95 % 10 13 2874 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 10 13 2928
70 % 11 14 2790
50 % 11 14 2789
40 % 11 14 2749
30 % 11 14 2721

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures