Sequence Similarity Clusters for the Entities in PDB 4J2L

Entity #1 | Chains: A,B
Ataxin-1 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 14997
95 % 5 6 4139 Flexibility: Low
Max RMSD: 5.0, Avg RMSD: 1.9
PDBFlex
90 % 5 6 4235
70 % 5 6 4311
50 % 5 6 4203
40 % 5 6 4113
30 % 5 6 4017
Entity #2 | Chains: C,D
Protein capicua homolog protein, length: 28 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46361
95 % 1 1 29944 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 2.2
PDBFlex
90 % 1 1 34355
70 % 1 1 30739
50 % 1 1 26815
40 % 1 1 20912
30 % 1 1 21665

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures