Sequence Similarity Clusters for the Entities in PDB 4IOC

Entity #1 | Chains: X
23S ribosomal RNA rna, length: 2880 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: H
50S ribosomal protein L14 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 24 2002
95 % 6 24 2620 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 6 24 2694
70 % 126 225 97
50 % 162 482 42
40 % 162 482 51
30 % 162 482 52
Entity #11 | Chains: I
50S ribosomal protein L15 protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 24 2010
95 % 6 24 2561 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 2.9
PDBFlex
90 % 6 24 2711
70 % 6 24 2732
50 % 6 24 2735
40 % 161 464 63
30 % 161 464 64
Entity #12 | Chains: J
50S ribosomal protein L16 protein, length: 141 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 24 2538
95 % 6 24 3151 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.7
PDBFlex
90 % 6 24 3226
70 % 126 229 95
50 % 161 467 48
40 % 161 467 61
30 % 161 467 61
Entity #13 | Chains: K
50S ribosomal protein L17 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 24 2081
95 % 6 24 2626 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 6 24 2702
70 % 6 24 2725
50 % 156 427 59
40 % 162 466 54
30 % 162 468 55
Entity #14 | Chains: L
50S ribosomal protein L18 protein, length: 114 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 22 2165
95 % 6 24 2568 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 6 24 2635
70 % 6 24 2666
50 % 160 449 57
40 % 160 449 75
30 % 160 449 77
Entity #15 | Chains: M
50S ribosomal protein L19 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 3401
95 % 5 19 4128 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.0
PDBFlex
90 % 5 19 4193
70 % 5 19 4176
50 % 5 19 4088
40 % 5 19 4028
30 % 5 19 3941
Entity #16 | Chains: N
50S ribosomal protein L20 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 1669
95 % 6 28 2192 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 6 28 2255
70 % 6 28 2317
50 % 162 469 45
40 % 162 477 52
30 % 162 477 53
Entity #17 | Chains: O
50S ribosomal protein L21 protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 1729
95 % 6 28 2204 Flexibility: Medium
Max RMSD: 7.9, Avg RMSD: 3.7
PDBFlex
90 % 6 28 2245
70 % 6 28 2340
50 % 132 261 109
40 % 161 464 64
30 % 161 464 65
Entity #18 | Chains: P
50S ribosomal protein L22 protein, length: 134 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 1662
95 % 6 30 2016 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 6 30 2066
70 % 6 30 2104
50 % 6 30 2151
40 % 6 30 2242
30 % 6 30 2208
Entity #19 | Chains: Q
50S ribosomal protein L23 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 26 1831
95 % 6 26 2339 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 6 26 2385
70 % 6 26 2455
50 % 126 228 122
40 % 161 470 57
30 % 161 470 59
Entity #2 | Chains: Y
5S ribosomal RNA rna, length: 123 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #20 | Chains: R
50S ribosomal protein L24 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 25 1927
95 % 6 25 2469 Flexibility: Low
Max RMSD: 3.3, Avg RMSD: 1.6
PDBFlex
90 % 6 25 2531
70 % 6 25 2577
50 % 6 25 2599
40 % 6 25 2616
30 % 6 25 2603
Entity #21 | Chains: S
50S ribosomal protein L25 protein, length: 237 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 25 2356
95 % 5 25 2895 Flexibility: Low
Max RMSD: 6.5, Avg RMSD: 1.7
PDBFlex
90 % 5 25 2981
70 % 5 25 3103
50 % 5 25 3106
40 % 5 25 3058
30 % 5 25 3000
Entity #22 | Chains: T
50S ribosomal protein L27 protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 29 1625
95 % 6 29 2092 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 5.0
PDBFlex
90 % 6 29 2176
70 % 36 221 173
50 % 163 461 51
40 % 163 461 65
30 % 163 461 66
Entity #23 | Chains: U
50S ribosomal protein L28 protein, length: 81 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 14 5098
95 % 4 14 6178 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 4 14 5874
70 % 4 14 6103
50 % 4 14 5826
40 % 4 14 5673
30 % 4 14 5428
Entity #24 | Chains: V
50S ribosomal protein L29 protein, length: 67 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 26 1772
95 % 6 26 2321 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.5
PDBFlex
90 % 6 26 2371
70 % 6 26 2439
50 % 6 26 2467
40 % 6 26 2483
30 % 155 421 83
Entity #25 | Chains: W
50S ribosomal protein L30 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 24 1972
95 % 6 24 2548 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 0.9
PDBFlex
90 % 6 24 2677
70 % 6 24 2646
50 % 41 251 177
40 % 162 459 68
30 % 162 459 70
Entity #26 | Chains: Z
50S ribosomal protein L32 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 34 1368
95 % 6 34 1786 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.9
PDBFlex
90 % 6 34 1820
70 % 6 34 1868
50 % 132 261 110
40 % 132 262 130
30 % 161 456 73
Entity #27 | Chains: 1
50S ribosomal protein L33 protein, length: 55 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 20 2604
95 % 4 20 3179 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 1.5
PDBFlex
90 % 4 20 3253
70 % 5 22 2949
50 % 34 218 197
40 % 138 425 81
30 % 138 425 85
Entity #28 | Chains: 2
50S ribosomal protein L34 protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 1671
95 % 6 28 2194 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.1
PDBFlex
90 % 6 28 2257
70 % 35 221 171
50 % 161 463 52
40 % 161 463 66
30 % 161 463 67
Entity #29 | Chains: 3
50S ribosomal protein L35 protein, length: 66 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 28 1680
95 % 6 28 2218 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.7
PDBFlex
90 % 6 28 2281
70 % 6 28 2345
50 % 127 230 120
40 % 127 240 137
30 % 127 230 148
Entity #3 | Chains: A
50S ribosomal protein L2 protein, length: 274 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 22 2255
95 % 6 24 2647 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.2
PDBFlex
90 % 6 24 2687
70 % 127 226 98
50 % 162 469 47
40 % 162 469 59
30 % 162 469 60
Entity #30 | Chains: 4
50S ribosomal protein L36 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 22 2179
95 % 4 22 2757 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 4 22 2842
70 % 89 212 133
50 % 117 403 79
40 % 117 403 96
30 % 117 403 94
Entity #4 | Chains: B
50S ribosomal protein L3 protein, length: 211 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 27 1746
95 % 6 27 2291 Flexibility: Low
Max RMSD: 2.7, Avg RMSD: 1.5
PDBFlex
90 % 6 27 2346
70 % 6 27 2388
50 % 168 475 46
40 % 168 479 55
30 % 168 480 57
Entity #5 | Chains: C
50S ribosomal protein L4 protein, length: 205 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 29 1603
95 % 6 29 2108 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.2
PDBFlex
90 % 6 29 2161
70 % 6 29 2213
50 % 127 231 119
40 % 163 460 69
30 % 163 461 69
Entity #6 | Chains: D
50S ribosomal protein L5 protein, length: 180 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 24 2034
95 % 6 24 2521 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.4
PDBFlex
90 % 6 24 2586
70 % 129 228 94
50 % 168 464 50
40 % 168 464 62
30 % 168 464 63
Entity #7 | Chains: E
50S ribosomal protein L6 protein, length: 185 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 22 2213
95 % 5 22 2764 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.9
PDBFlex
90 % 5 22 2849
70 % 5 22 2887
50 % 125 233 118
40 % 161 470 58
30 % 161 470 58
Entity #8 | Chains: F
50S ribosomal protein L11 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 2729
95 % 6 21 2964 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 2.1
PDBFlex
90 % 6 21 3046
70 % 23 65 649
50 % 53 265 156
40 % 53 265 169
30 % 53 273 169
Entity #9 | Chains: G
50S ribosomal protein L13 protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 19 3415
95 % 5 19 4167 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.2
PDBFlex
90 % 5 19 4230
70 % 5 19 4222
50 % 5 19 4120
40 % 5 19 4057
30 % 5 19 3975

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures