Sequence Similarity Clusters for the Entities in PDB 4IFD

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 11 4732
95 % 1 11 5058
90 % 1 11 5082
70 % 1 11 4944
50 % 1 11 4711
40 % 1 11 4434
30 % 1 11 4003
Entity #10 | Chains: J
Exosome complex exonuclease DIS3 protein, length: 1003 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 10413
95 % 1 9 8401 Flexibility: High
Max RMSD: 22.1, Avg RMSD: 14.0
PDBFlex
90 % 1 9 8325
70 % 1 9 8013
50 % 1 9 7368
40 % 1 9 6780
30 % 1 9 5941
Entity #11 | Chains: K
Exosome complex exonuclease RRP6 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 47468
95 % 1 1 39415
90 % 1 1 37577
70 % 1 1 33303
50 % 1 1 28302
40 % 1 1 24826
30 % 1 1 20678
Entity #12 | Chains: R
RNA (45-MER) rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 4795
95 % 1 11 5113 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 1 11 5138
70 % 1 11 4992
50 % 1 11 4758
40 % 1 11 4478
30 % 19 43 512
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 43284
95 % 1 10 5384 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 1 10 5415
70 % 1 10 5286
50 % 1 10 5015
40 % 1 10 4706
30 % 1 10 4222
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5117
95 % 1 10 5440 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 1 10 5470
70 % 1 10 5347
50 % 1 10 5084
40 % 1 10 4763
30 % 1 10 4276
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 7468
95 % 1 10 5439 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 1 10 5469
70 % 1 10 5346
50 % 1 10 5083
40 % 1 10 4762
30 % 1 10 4275
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8326
95 % 1 10 5445 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 10 5475
70 % 1 10 5353
50 % 1 10 5090
40 % 1 10 4774
30 % 1 10 4283
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 5118
95 % 1 10 5441
90 % 1 10 5471
70 % 1 10 5348
50 % 1 10 5085
40 % 1 10 4764
30 % 1 10 4277
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 9552
95 % 1 8 9406 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 1 8 9296
70 % 1 8 8886
50 % 1 8 7918
40 % 1 8 7252
30 % 1 8 6449
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5116
95 % 1 10 5438 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.5
PDBFlex
90 % 1 10 5468
70 % 1 10 5345
50 % 1 10 5082
40 % 1 10 4761
30 % 1 10 4274

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures