Sequence Similarity Clusters for the Entities in PDB 4IFD

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 4990
95 % 1 11 5299 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.5
PDBFlex
90 % 1 11 5312
70 % 1 11 5179
50 % 1 11 4918
40 % 1 11 4635
30 % 1 11 4160
Entity #10 | Chains: J
Exosome complex exonuclease DIS3 protein, length: 1003 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 10928
95 % 1 9 8810 Flexibility: High
Max RMSD: 22.1, Avg RMSD: 13.4
PDBFlex
90 % 1 9 8730
70 % 1 9 8419
50 % 1 9 7702
40 % 1 12 5624
30 % 1 12 4933
Entity #11 | Chains: K
Exosome complex exonuclease RRP6 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 49399
95 % 1 1 40962
90 % 1 1 39004
70 % 1 1 34460
50 % 1 1 29282
40 % 1 1 25676
30 % 1 1 21405
Entity #12 | Chains: R
RNA (45-MER) rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 5040
95 % 1 11 5361 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 11 5373
70 % 1 11 5235
50 % 1 11 4976
40 % 1 11 4686
30 % 19 49 508
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 45071
95 % 1 10 5651 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 1 10 5671
70 % 1 10 5534
50 % 1 10 5238
40 % 1 10 4915
30 % 1 10 4400
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5385
95 % 1 10 5712 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 1 10 5730
70 % 1 10 5598
50 % 1 10 5307
40 % 1 10 4968
30 % 1 10 4454
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 7863
95 % 1 10 5711 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 10 5729
70 % 1 10 5597
50 % 1 10 5306
40 % 1 10 4967
30 % 1 10 4453
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8744
95 % 1 10 5718 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 1 10 5736
70 % 1 10 5604
50 % 1 10 5315
40 % 1 10 4980
30 % 1 10 4463
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5386
95 % 1 10 5713 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 1 10 5731
70 % 1 10 5599
50 % 1 10 5308
40 % 1 10 4969
30 % 1 10 4455
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 10013
95 % 1 8 9862 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.5
PDBFlex
90 % 1 8 9742
70 % 1 8 9317
50 % 1 8 8263
40 % 1 8 8099
30 % 1 8 6714
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5384
95 % 1 10 5710 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.4
PDBFlex
90 % 1 10 5728
70 % 1 10 5596
50 % 1 10 5305
40 % 1 10 4966
30 % 1 10 4452

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures