Sequence Similarity Clusters for the Entities in PDB 4IFD

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 10 4394
95 % 1 10 5200
90 % 1 10 5223
70 % 1 10 5112
50 % 1 10 4895
40 % 1 10 4630
30 % 1 10 4237
Entity #10 | Chains: J
Exosome complex exonuclease DIS3 protein, length: 1003 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10234
95 % 1 8 8304 Flexibility: High
Max RMSD: 22.1, Avg RMSD: 14.0
PDBFlex
90 % 1 8 8250
70 % 1 8 7972
50 % 1 8 7345
40 % 1 8 6833
30 % 1 8 6097
Entity #11 | Chains: K
Exosome complex exonuclease RRP6 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63963
95 % 1 1 44522
90 % 1 1 42235
70 % 1 1 37118
50 % 1 1 31596
40 % 1 1 27864
30 % 1 1 23618
Entity #12 | Chains: R
RNA (45-MER) rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 5149
95 % 1 10 5240 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.9
PDBFlex
90 % 1 10 5262
70 % 1 10 5155
50 % 1 10 4926
40 % 1 10 4660
30 % 19 42 491
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 18518
95 % 1 9 5594 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 1 9 5612
70 % 1 9 5526
50 % 1 9 5237
40 % 1 9 4942
30 % 1 9 4497
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 5161
95 % 1 9 5874 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 1 9 5890
70 % 1 9 5767
50 % 1 9 5434
40 % 1 9 5110
30 % 1 9 4617
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 7325
95 % 1 9 5813 Flexibility: Low
Max RMSD: 0.7, Avg RMSD: 0.6
PDBFlex
90 % 1 9 5829
70 % 1 9 5715
50 % 1 9 5392
40 % 1 9 5072
30 % 1 9 4596
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 27798
95 % 1 9 5865 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 1 9 5880
70 % 1 9 5759
50 % 1 9 5426
40 % 1 9 5105
30 % 1 9 4614
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 9 5164
95 % 1 9 5876
90 % 1 9 5893
70 % 1 9 5771
50 % 1 9 5439
40 % 1 9 5113
30 % 1 9 4620
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10414
95 % 1 7 10438 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.4
PDBFlex
90 % 1 7 10313
70 % 1 7 9793
50 % 1 7 8876
40 % 1 7 8136
30 % 1 7 7177
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 9 5021
95 % 1 9 5757 Flexibility: Medium
Max RMSD: 7.0, Avg RMSD: 3.5
PDBFlex
90 % 1 9 5776
70 % 1 9 5671
50 % 1 9 5354
40 % 1 9 5032
30 % 1 9 4570

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures