Sequence Similarity Clusters for the Entities in PDB 4IFD

Entity #1 | Chains: A
Exosome complex component RRP45 protein, length: 304 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 4843
95 % 1 11 5153 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 1.5
PDBFlex
90 % 1 11 5174
70 % 1 11 5046
50 % 1 11 4810
40 % 1 11 4541
30 % 1 11 4090
Entity #10 | Chains: J
Exosome complex exonuclease DIS3 protein, length: 1003 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 10639
95 % 1 9 8576 Flexibility: High
Max RMSD: 22.1, Avg RMSD: 13.4
PDBFlex
90 % 1 9 8507
70 % 1 9 8184
50 % 1 9 7517
40 % 1 12 5512
30 % 1 12 4846
Entity #11 | Chains: K
Exosome complex exonuclease RRP6 protein, length: 179 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 48319
95 % 1 1 40069
90 % 1 1 38171
70 % 1 1 33772
50 % 1 1 28676
40 % 1 1 25129
30 % 1 1 20936
Entity #12 | Chains: R
RNA (45-MER) rna, length: 45 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
Exosome complex component SKI6 protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 4892
95 % 1 11 5210 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 1 11 5229
70 % 1 11 5097
50 % 1 11 4864
40 % 1 11 4588
30 % 19 49 500
Entity #3 | Chains: C
Exosome complex component RRP43 protein, length: 393 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 44077
95 % 1 10 5491 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.2
PDBFlex
90 % 1 10 5525
70 % 1 10 5403
50 % 1 10 5125
40 % 1 10 4819
30 % 1 10 4321
Entity #4 | Chains: D
Exosome complex component RRP46 protein, length: 245 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5232
95 % 1 10 5550 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.4
PDBFlex
90 % 1 10 5578
70 % 1 10 5464
50 % 1 10 5192
40 % 1 10 4872
30 % 1 10 4374
Entity #5 | Chains: E
Exosome complex component RRP42 protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 7662
95 % 1 10 5549 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.6
PDBFlex
90 % 1 10 5577
70 % 1 10 5463
50 % 1 10 5191
40 % 1 10 4871
30 % 1 10 4373
Entity #6 | Chains: F
Exosome complex component MTR3 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 8522
95 % 1 10 5556 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 1 10 5584
70 % 1 10 5470
50 % 1 10 5199
40 % 1 10 4884
30 % 1 10 4381
Entity #7 | Chains: G
Exosome complex component RRP40 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5233
95 % 1 10 5551 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.2
PDBFlex
90 % 1 10 5579
70 % 1 10 5465
50 % 1 10 5193
40 % 1 10 4873
30 % 1 10 4375
Entity #8 | Chains: H
Exosome complex component RRP4 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 8 9762
95 % 1 8 9603 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.5
PDBFlex
90 % 1 8 9486
70 % 1 8 9072
50 % 1 8 8069
40 % 1 8 7396
30 % 1 8 6568
Entity #9 | Chains: I
Exosome complex component CSL4 protein, length: 301 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 10 5231
95 % 1 10 5548 Flexibility: Low
Max RMSD: 7.5, Avg RMSD: 2.4
PDBFlex
90 % 1 10 5576
70 % 1 10 5462
50 % 1 10 5190
40 % 1 10 4870
30 % 1 10 4372

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures