Sequence Similarity Clusters for the Entities in PDB 4IEM

Entity #1 | Chains: A,B,C,D
DNA-(apurinic or apyrimidinic site) lyase protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 11 12 1903
95 % 31 37 761 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.7
PDBFlex
90 % 31 37 799
70 % 32 38 793
50 % 32 38 851
40 % 32 38 899
30 % 32 38 935
Entity #2 | Chains: E,H,K,N
DNA (5'-D(*GP*CP*TP*AP*C)-3') dna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: F,I,L,O
DNA (5'-D(P*(3DR)P*GP*AP*TP*CP*G)-3') dna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: G,J,M,P
DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3') dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures