Sequence Similarity Clusters for the Entities in PDB 4HNA

Entity #1 | Chains: A
Tubulin alpha chain protein, length: 451 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 106 153 43
95 % 108 245 13 Flexibility: Low
Max RMSD: 3.4, Avg RMSD: 1.0
PDBFlex
90 % 108 246 15
70 % 110 256 21
50 % 110 256 45
40 % 221 512 8
30 % 223 520 11
Entity #2 | Chains: B
Tubulin beta chain protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 7109
95 % 110 242 14 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 0.7
PDBFlex
90 % 110 249 13
70 % 112 256 20
50 % 112 256 43
40 % 222 512 8
30 % 224 520 11
Entity #3 | Chains: D
DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) D2 protein, length: 169 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 43255
95 % 2 2 33962 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 12 16 2129
70 % 82 99 257
50 % 91 109 220
40 % 97 119 218
30 % 97 119 229
Entity #4 | Chains: K
Kinesin-1 heavy chain protein, length: 349 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 8728
95 % 9 13 2341 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 1.3
PDBFlex
90 % 9 13 2409
70 % 12 26 1385
50 % 12 26 1401
40 % 15 32 1123
30 % 99 152 227

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures