Sequence Similarity Clusters for the Entities in PDB 4GLV

Entity #1 | Chains: A,C,E,G
Lysozyme C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 703 767 3
95 % 755 820 5 Flexibility: No
Max RMSD: 2.0, Avg RMSD: 0.5
PDBFlex
90 % 769 837 5
70 % 775 844 11
50 % 994 1070 9
40 % 999 1076 10
30 % 1026 1105 15
Entity #2 | Chains: B,D,F,H
OBody AM3L09 protein, length: 107 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27795
95 % 1 1 23677 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 3 3 12806
70 % 4 5 4498
50 % 4 5 4374
40 % 4 5 4283
30 % 4 5 4173

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures