Sequence Similarity Clusters for the Entities in PDB 4G8G

Entity #1 | Chains: A
HLA class I histocompatibility antigen, B-27 alpha chain protein, length: 276 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 19 19 3203
95 % 32 34 1790 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 181 231 146
70 % 465 812 6
50 % 466 817 8
40 % 496 861 9
30 % 499 885 11
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 412 698 2
95 % 445 747 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 452 763 3
70 % 570 1064 4
50 % 584 1088 4
40 % 584 1088 4
30 % 584 1088 7
Entity #3 | Chains: C
P24 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: D
alpha chain C12C TCR protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 53208
95 % 2 2 29655 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 3 21045
70 % 7 23 1908
50 % 117 393 76
40 % 117 393 92
30 % 117 393 91
Entity #5 | Chains: E
beta chain C12C TCR protein, length: 248 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 35948
95 % 12 30 2007 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.3
PDBFlex
90 % 33 81 399
70 % 118 380 43
50 % 120 402 64
40 % 120 402 82
30 % 120 402 86

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures