Sequence Similarity Clusters for the Entities in PDB 4G3Y

Entity #1 | Chains: L
infliximab Fab L protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 5654
95 % 7 7 6403 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 2.3
PDBFlex
90 % 39 44 735
70 % 1215 2439 2
50 % 3112 6281 1
40 % 3112 6281 1
30 % 3134 6327 1
Entity #2 | Chains: H
infliximab Fab H protein, length: 226 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 7 5488
95 % 7 7 6381 Flexibility: Low
Max RMSD: 5.2, Avg RMSD: 2.8
PDBFlex
90 % 11 11 4755
70 % 1493 3009 1
50 % 3113 6281 1
40 % 3113 6281 1
30 % 3135 6327 1
Entity #3 | Chains: C
Tumor necrosis factor protein, length: 157 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 14 457
95 % 12 26 375 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 12 26 390
70 % 13 27 409
50 % 13 27 464
40 % 13 27 486
30 % 15 33 474

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures