Sequence Similarity Clusters for the Entities in PDB 4FZC

Entity #1 | Chains: A,O
Proteasome component Y7 protein, length: 250 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 251 309 9
95 % 251 309 20 Flexibility: No
Max RMSD: 3.5, Avg RMSD: 0.3
PDBFlex
90 % 251 309 23
70 % 251 309 33
50 % 251 309 70
40 % 262 366 42
30 % 1590 2273 2
Entity #10 | Chains: J,X
Proteasome component C11 protein, length: 198 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 251 305 18
95 % 251 305 30 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.3
PDBFlex
90 % 251 305 32
70 % 251 305 41
50 % 251 305 75
40 % 262 360 49
30 % 262 362 50
Entity #11 | Chains: K,Y
Proteasome component PRE2 protein, length: 212 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 150 182 76
95 % 211 247 61 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.4
PDBFlex
90 % 211 247 68
70 % 257 312 28
50 % 257 316 63
40 % 257 316 81
30 % 260 339 30
Entity #12 | Chains: L,Z
Proteasome component C5 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 218 273 21
95 % 251 306 29 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 251 306 30
70 % 251 306 40
50 % 251 306 74
40 % 251 328 79
30 % 251 328 86
Entity #13 | Chains: M,a
Proteasome component PRE4 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 251 306 16
95 % 251 306 28 Flexibility: No
Max RMSD: 1.1, Avg RMSD: 0.2
PDBFlex
90 % 251 306 31
70 % 251 306 39
50 % 251 306 73
40 % 251 306 90
30 % 251 306 91
Entity #14 | Chains: N,b
Proteasome component PRE3 protein, length: 196 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 251 306 15
95 % 251 306 26 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.2
PDBFlex
90 % 251 306 28
70 % 251 306 37
50 % 251 306 72
40 % 251 310 87
30 % 251 310 89
Entity #15 | Chains: c,d,e,f
Cepafungin I protein, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B,P
Proteasome component Y13 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 251 309 11
95 % 251 309 21 Flexibility: No
Max RMSD: 2.6, Avg RMSD: 0.3
PDBFlex
90 % 251 309 24
70 % 251 309 34
50 % 262 364 36
40 % 262 366 43
30 % 1591 2273 2
Entity #3 | Chains: C,Q
Proteasome component PRE6 protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 251 309 10
95 % 251 309 22 Flexibility: No
Max RMSD: 2.8, Avg RMSD: 0.3
PDBFlex
90 % 251 309 25
70 % 251 309 35
50 % 262 363 38
40 % 265 393 18
30 % 1592 2273 2
Entity #4 | Chains: D,R
Proteasome component PUP2 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 249 308 13
95 % 250 309 24 Flexibility: No
Max RMSD: 2.2, Avg RMSD: 0.2
PDBFlex
90 % 251 310 21
70 % 251 310 31
50 % 262 365 35
40 % 262 365 45
30 % 1593 2273 2
Entity #5 | Chains: E,S
Proteasome component PRE5 protein, length: 233 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 249 307 17
95 % 251 309 19 Flexibility: No
Max RMSD: 0.9, Avg RMSD: 0.2
PDBFlex
90 % 251 309 22
70 % 251 309 32
50 % 251 309 69
40 % 251 309 88
30 % 1594 2273 2
Entity #6 | Chains: F,T
Proteasome component C1 protein, length: 244 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 21 45 495
95 % 21 45 662 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 21 45 693
70 % 21 45 725
50 % 32 97 333
40 % 32 99 343
30 % 1595 2273 2
Entity #7 | Chains: G,U
Proteasome component C7-alpha protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 251 309 12
95 % 251 309 23 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.2
PDBFlex
90 % 251 309 26
70 % 251 309 36
50 % 262 361 41
40 % 262 367 44
30 % 1596 2273 2
Entity #8 | Chains: H,V
Proteasome component PUP1 protein, length: 222 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 206 240 42
95 % 231 285 37 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 241 296 38
70 % 241 296 46
50 % 262 339 53
40 % 262 339 69
30 % 262 339 72
Entity #9 | Chains: I,W
Proteasome component PUP3 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 251 306 14
95 % 251 306 27 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.2
PDBFlex
90 % 251 306 29
70 % 251 306 38
50 % 262 357 42
40 % 262 363 46
30 % 262 363 48

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures