Sequence Similarity Clusters for the Entities in PDB 4FQR

Entity #1 | Chains: A,C,E,G,I,K,M,O,Q,S,U,W
Hemagglutinin HA1 chain protein, length: 323 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 10 1367
95 % 49 50 308 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.6
PDBFlex
90 % 53 54 305
70 % 96 97 205
50 % 108 109 200
40 % 379 391 14
30 % 379 391 19
Entity #2 | Chains: B,D,F,H,J,L,N,P,R,T,V,X
Hemagglutinin HA2 chain protein, length: 174 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 20 21 680
95 % 71 72 263 Flexibility: Low
Max RMSD: 5.7, Avg RMSD: 1.0
PDBFlex
90 % 89 90 229
70 % 185 187 82
50 % 367 377 11
40 % 367 377 16
30 % 377 388 23
Entity #3 | Chains: a,c,e,g,i,k,m,o,q,s,u,w
Broadly neutralizing antibody C05, heavy chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 3818
95 % 6 6 2962 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 6 6 3010
70 % 2822 3036 1
50 % 5870 6341 1
40 % 5870 6341 1
30 % 5910 6387 1
Entity #4 | Chains: b,d,f,h,j,l,n,p,r,t,v,x
Broadly neutralizing antibody C05, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 2315
95 % 6 6 2988 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 526 560 4
70 % 2290 2454 2
50 % 5871 6341 1
40 % 5871 6341 1
30 % 5911 6387 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures