Sequence Similarity Clusters for the Entities in PDB 4FP8

Entity #1 | Chains: A,B,C,D
Hemagglutinin HA1 chain protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 7665
95 % 4 10 3643 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 4 10 3705
70 % 4 10 3647
50 % 4 10 3651
40 % 4 10 3633
30 % 4 10 3552
Entity #2 | Chains: H,I,J,K
Antibody C05, heavy chain protein, length: 241 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 3765
95 % 4 6 3049 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 4 6 3081
70 % 2129 3058 1
50 % 4461 6427 1
40 % 4462 6428 1
30 % 4496 6475 1
Entity #3 | Chains: L,M,N,O
Antibody C05, light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 6 2406
95 % 4 6 3050 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 385 573 4
70 % 1767 2488 2
50 % 4462 6427 1
40 % 4463 6428 1
30 % 4497 6475 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures