Sequence Similarity Clusters for the Entities in PDB 4F52

Entity #1 | Chains: A,C
Cullin-1 protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 51006
95 % 1 1 38845 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 1 37002
70 % 1 1 32935
50 % 1 1 28675
40 % 1 1 25959
30 % 1 1 23067
Entity #2 | Chains: B,D
E3 ubiquitin-protein ligase RBX1 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 3805
95 % 2 7 6053 Flexibility: Medium
Max RMSD: 12.2, Avg RMSD: 6.7
PDBFlex
90 % 2 12 3796
70 % 2 12 3788
50 % 2 12 3723
40 % 2 12 3700
30 % 2 12 3613
Entity #3 | Chains: E,F
Glomulin protein, length: 596 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49836
95 % 1 1 31826 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 2.2
PDBFlex
90 % 1 1 37003
70 % 1 1 32936
50 % 1 1 28676
40 % 1 1 25960
30 % 1 1 23068

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3DPL 2 R RING-box protein 1 9606 2.3.2.27 | Details 2.3.2.32 | Details
2 4F52 2 B, D E3 ubiquitin-protein ligase RBX1 UNP residues 5-108 9606 2.3.2.27 | Details 2.3.2.32 | Details
3 4P5O 2 B, D E3 ubiquitin-protein ligase RBX1 9606 2.3.2.27 | Details 2.3.2.32 | Details
4 3DQV 3 R, Y Rbx1 Rbx1 residues 5-108 9606 2.3.2.27 | Details 2.3.2.32 | Details
5 1U6G 2 B RING-box protein 1 9606 2.3.2.27 | Details 2.3.2.32 | Details
6 3RTR 2 B, D, F, H E3 ubiquitin-protein ligase RBX1 UNP residues 5-108 9606 2.3.2.27 | Details 2.3.2.32 | Details
7 2HYE 4 D RING-box protein 1 9606 2.3.2.27 | Details 2.3.2.32 | Details
8 4A0C 3 D, F E3 UBIQUITIN-PROTEIN LIGASE RBX1 10090 2.3.2.27 | Details 2.3.2.32 | Details
9 5N4W 3 R E3 ubiquitin-protein ligase RBX1 9606 2.3.2.27 | Details 2.3.2.32 | Details
10 4A0K 2 B E3 UBIQUITIN-PROTEIN LIGASE RBX1 RESIDUES 12-108 10090 2.3.2.27 | Details 2.3.2.32 | Details
11 4A0L 4 F, I E3 UBIQUITIN-PROTEIN LIGASE RBX1 RESIDUES 12-108 10090 2.3.2.27 | Details 2.3.2.32 | Details
12 2LGV 1 A E3 ubiquitin-protein ligase RBX1 sequence database residues 12-108 9606 2.3.2.27 | Details 2.3.2.32 | Details