Sequence Similarity Clusters for the Entities in PDB 4F52

Entity #1 | Chains: A,C
Cullin-1 protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50426
95 % 1 1 38403 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.9
PDBFlex
90 % 1 1 36721
70 % 1 1 32735
50 % 1 1 28483
40 % 1 1 25833
30 % 1 1 22897
Entity #2 | Chains: B,D
E3 ubiquitin-protein ligase RBX1 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 9 3756
95 % 2 7 6009 Flexibility: Medium
Max RMSD: 12.2, Avg RMSD: 6.7
PDBFlex
90 % 2 12 3728
70 % 2 12 3724
50 % 2 12 3650
40 % 2 12 3622
30 % 2 12 3551
Entity #3 | Chains: E,F
Glomulin protein, length: 596 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50427
95 % 1 1 37687 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 2.2
PDBFlex
90 % 1 1 36722
70 % 1 1 32736
50 % 1 1 28484
40 % 1 1 25834
30 % 1 1 22898

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures