Sequence Similarity Clusters for the Entities in PDB 4EDW

Entity #1 | Chains: V
Beta-nerve growth factor protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 4605
95 % 4 8 4649 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.3
PDBFlex
90 % 7 15 2141
70 % 7 15 2223
50 % 7 15 2265
40 % 7 15 2297
30 % 7 15 2303
Entity #2 | Chains: L
tanezumab Fab light chain protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 71738
95 % 6 10 5390 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.9
PDBFlex
90 % 344 784 2
70 % 1139 2399 2
50 % 1434 3045 2
40 % 1434 3045 2
30 % 2930 6183 1
Entity #3 | Chains: H
tanezumab Fab heavy chain protein, length: 231 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 71736
95 % 1 1 57995
90 % 1 1 54691
70 % 1397 2943 1
50 % 1479 3094 1
40 % 1479 3094 1
30 % 2931 6183 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures