Sequence Similarity Clusters for the Entities in PDB 4DM6

Entity #1 | Chains: A,B
Retinoic acid receptor beta protein, length: 267 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 18476
95 % 2 7 6366 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 1.0
PDBFlex
90 % 2 7 6388
70 % 7 19 2821
50 % 7 19 2812
40 % 7 19 2821
30 % 7 19 2797
Entity #2 | Chains: E,F
Nuclear receptor coactivator 1 protein, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 21 1312
95 % 3 21 1734
90 % 3 21 1799
70 % 3 21 1839
50 % 3 21 1873
40 % 3 21 1921
30 % 3 21 1954

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures