Sequence Similarity Clusters for the Entities in PDB 4DK3

Entity #1 | Chains: A,B
single domain antibody VHH protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 15927
95 % 3 3 16897 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 3 3 14102
70 % 411 608 7
50 % 564 870 5
40 % 575 895 6
30 % 825 1317 5
Entity #2 | Chains: C,D
RNA-editing complex protein MP81 protein, length: 105 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 14563
95 % 3 3 15439 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.8
PDBFlex
90 % 3 3 14632
70 % 3 3 13817
50 % 3 3 13981
40 % 3 3 11745
30 % 3 3 10788

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures