Sequence Similarity Clusters for the Entities in PDB 4DHJ

Entity #1 | Chains: A,E,I,L
Ubiquitin thioesterase otubain-like protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 19565
95 % 2 2 18190 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.4
PDBFlex
90 % 2 2 17835
70 % 3 4 12253
50 % 3 4 11232
40 % 3 4 10565
30 % 3 4 9445
Entity #2 | Chains: B,F,J,M
Ubiquitin aldehyde protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 170 383 4
95 % 206 476 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 213 490 7
70 % 236 540 9
50 % 238 555 11
40 % 238 559 14
30 % 244 575 20
Entity #3 | Chains: D,H
Ubiquitin protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 171 383 4
95 % 207 476 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 214 490 7
70 % 237 540 9
50 % 239 555 11
40 % 239 559 14
30 % 245 575 20
Entity #4 | Chains: C,G,K,N
Ubiquitin-conjugating enzyme E2 N protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 15 1189
95 % 14 28 884 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.0
PDBFlex
90 % 14 28 924
70 % 14 28 977
50 % 14 28 1014
40 % 64 110 334
30 % 95 174 202

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures