Sequence Similarity Clusters for the Entities in PDB 4DDG

Entity #1 | Chains: A,B,C,J,K,L
Ubiquitin-conjugating enzyme E2 D2, Ubiquitin thioesterase OTUB1 protein, length: 399 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 8821
95 % 1 2 9571 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.8
PDBFlex
90 % 1 2 9504
70 % 1 2 9222
50 % 1 2 8510
40 % 1 2 8212
30 % 1 2 7686
Entity #2 | Chains: D,E,F,G,H,I,M,N,O,P,Q,R
Polyubiquitin-C protein, length: 76 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 282 393 4
95 % 352 491 6 Flexibility: Low
Max RMSD: 12.4, Avg RMSD: 1.4
PDBFlex
90 % 360 504 6
70 % 405 555 9
50 % 414 570 10
40 % 414 574 12
30 % 426 595 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures