Sequence Similarity Clusters for the Entities in PDB 4D61

Entity #1 | Chains: 1
18S RRNA rna, length: 1869 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: I
40S RIBOSOMAL PROTEIN S8 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 71 555
95 % 69 76 701
90 % 69 76 735
70 % 69 76 772
50 % 152 171 262
40 % 155 175 269
30 % 155 175 289
Entity #11 | Chains: J
40S RIBOSOMAL PROTEIN S9 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 76 508
95 % 69 76 688
90 % 69 76 730
70 % 147 166 252
50 % 158 181 229
40 % 160 185 238
30 % 160 185 251
Entity #12 | Chains: K
40S RIBOSOMAL PROTEIN S10 protein, length: 165 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 45 959
95 % 40 47 1256
90 % 40 47 1284
70 % 40 47 1327
50 % 40 48 1293
40 % 40 49 1342
30 % 40 49 1371
Entity #13 | Chains: L
40S RIBOSOMAL PROTEIN S11 protein, length: 158 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 77 501
95 % 69 77 682
90 % 69 77 716
70 % 69 78 741
50 % 156 178 238
40 % 156 178 251
30 % 156 178 269
Entity #14 | Chains: M
40S RIBOSOMAL PROTEIN S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 53 57 732
95 % 62 69 785
90 % 62 69 834
70 % 67 74 803
50 % 67 75 816
40 % 67 75 856
30 % 67 75 894
Entity #15 | Chains: N
40S RIBOSOMAL PROTEIN S13 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 76 514
95 % 69 76 694
90 % 69 76 726
70 % 151 171 248
50 % 157 178 239
40 % 160 183 241
30 % 160 183 256
Entity #16 | Chains: O
40S RIBOSOMAL PROTEIN S14 protein, length: 151 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 57 65 612
95 % 57 65 838
90 % 64 73 772
70 % 153 179 227
50 % 154 180 230
40 % 154 180 244
30 % 154 180 261
Entity #17 | Chains: P
40S RIBOSOMAL PROTEIN S15 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 20 28 1538
95 % 43 51 1141
90 % 43 51 1169
70 % 43 53 1161
50 % 138 160 307
40 % 142 165 307
30 % 142 165 327
Entity #18 | Chains: Q
40S RIBOSOMAL PROTEIN S16 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 69 577
95 % 61 69 782
90 % 61 69 833
70 % 62 72 826
50 % 149 173 255
40 % 151 177 257
30 % 152 178 270
Entity #19 | Chains: R
40S RIBOSOMAL PROTEIN S17 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 46 51 834
95 % 69 76 689
90 % 69 76 731
70 % 69 77 748
50 % 137 157 308
40 % 137 157 324
30 % 137 157 342
Entity #2 | Chains: A
40S RIBOSOMAL PROTEIN SA protein, length: 295 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 23 1979
95 % 41 48 1202
90 % 41 48 1229
70 % 41 48 1270
50 % 41 48 1294
40 % 41 48 1349
30 % 41 48 1375
Entity #20 | Chains: S
40S RIBOSOMAL PROTEIN S18 protein, length: 152 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 77 500
95 % 69 77 680
90 % 69 77 714
70 % 141 164 256
50 % 148 173 254
40 % 152 179 248
30 % 152 179 267
Entity #21 | Chains: T
40S RIBOSOMAL PROTEIN S19 protein, length: 145 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 40 1073
95 % 69 76 702
90 % 69 76 736
70 % 69 76 771
50 % 69 78 777
40 % 135 155 332
30 % 137 158 331
Entity #22 | Chains: U
40S RIBOSOMAL PROTEIN S20 protein, length: 119 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 46 926
95 % 40 48 1205
90 % 40 48 1231
70 % 40 49 1238
50 % 40 51 1218
40 % 40 51 1259
30 % 40 51 1302
Entity #23 | Chains: V
40S RIBOSOMAL PROTEIN S21 protein, length: 83 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 61 671
95 % 68 75 714
90 % 68 75 745
70 % 68 76 767
50 % 134 152 329
40 % 134 152 342
30 % 134 152 356
Entity #24 | Chains: W
40S RIBOSOMAL PROTEIN S15A protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 77 506
95 % 69 77 687
90 % 69 77 720
70 % 157 182 229
50 % 159 184 227
40 % 162 189 235
30 % 660 739 23
Entity #25 | Chains: X
40S RIBOSOMAL PROTEIN S23 protein, length: 143 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 67 75 529
95 % 69 79 659
90 % 69 80 683
70 % 156 185 210
50 % 160 191 219
40 % 160 191 231
30 % 160 191 242
Entity #26 | Chains: Y
40S RIBOSOMAL PROTEIN S24 protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 71 559
95 % 69 76 704
90 % 69 76 737
70 % 69 77 762
50 % 151 173 270
40 % 151 173 283
30 % 151 173 303
Entity #27 | Chains: Z
40S RIBOSOMAL PROTEIN S25 protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 43 50 853
95 % 43 50 1163
90 % 43 50 1188
70 % 43 51 1190
50 % 43 51 1230
40 % 44 52 1253
30 % 44 52 1295
Entity #28 | Chains: a
40S RIBOSOMAL PROTEIN S26 protein, length: 115 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 31 1401
95 % 34 41 1437
90 % 34 41 1453
70 % 34 42 1471
50 % 51 68 885
40 % 53 70 849
30 % 53 70 879
Entity #29 | Chains: b
40S RIBOSOMAL PROTEIN S27 protein, length: 84 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 76 516
95 % 69 76 700
90 % 69 76 734
70 % 137 156 270
50 % 147 168 271
40 % 147 168 286
30 % 147 168 307
Entity #3 | Chains: B
40S RIBOSOMAL PROTEIN S3A protein, length: 264 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 40 45 950
95 % 43 50 1168
90 % 43 50 1193
70 % 43 50 1230
50 % 117 136 354
40 % 123 143 349
30 % 123 143 364
Entity #30 | Chains: c
40S RIBOSOMAL PROTEIN S28 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 51 58 722
95 % 51 58 994
90 % 51 58 1031
70 % 152 172 246
50 % 156 179 236
40 % 157 180 245
30 % 157 180 264
Entity #31 | Chains: d
40S RIBOSOMAL PROTEIN S29 protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 64 70 567
95 % 66 74 727
90 % 66 74 762
70 % 130 150 278
50 % 135 158 310
40 % 135 158 326
30 % 135 158 344
Entity #32 | Chains: e
40S RIBOSOMAL PROTEIN S30 protein, length: 59 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 36 1362
95 % 31 36 1809
90 % 44 49 1353
70 % 44 51 1335
50 % 136 156 359
40 % 136 156 380
30 % 136 156 392
Entity #33 | Chains: f
UBIQUITIN-40S RIBOSOMAL PROTEIN S27A protein, length: 156 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 42 1142
95 % 39 45 1300
90 % 39 45 1330
70 % 57 72 774
50 % 61 76 758
40 % 63 79 763
30 % 63 79 801
Entity #34 | Chains: g
GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-2-LIKE 1 protein, length: 317 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 76 495
95 % 68 76 668
90 % 68 76 699
70 % 69 78 714
50 % 137 158 290
40 % 142 164 276
30 % 143 165 296
Entity #35 | Chains: h
EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 protein, length: 436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 11 4816
95 % 16 18 3570
90 % 16 18 3643
70 % 16 18 3628
50 % 17 20 2846
40 % 17 20 2849
30 % 18 21 2771
Entity #36 | Chains: i
EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT ERF3A protein, length: 426 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 59544
95 % 1 2 30426
90 % 1 2 29274
70 % 1 2 26431
50 % 4 6 11401
40 % 4 6 10721
30 % 90 107 434
Entity #37 | Chains: j
CRICKET PARALYSIS VIRUS IRES RNA rna, length: 201 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: C
40S RIBOSOMAL PROTEIN S2 protein, length: 293 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 19 24 1860
95 % 31 36 1599
90 % 40 45 1318
70 % 41 47 1305
50 % 43 50 1242
40 % 43 50 1290
30 % 43 50 1333
Entity #5 | Chains: D
40S RIBOSOMAL PROTEIN S3 protein, length: 243 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 38 1130
95 % 58 66 824
90 % 58 66 860
70 % 58 67 889
50 % 131 152 325
40 % 131 152 337
30 % 131 152 353
Entity #6 | Chains: E
40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1 protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 12 5932
95 % 8 12 6716
90 % 69 76 725
70 % 143 161 262
50 % 152 172 260
40 % 155 176 263
30 % 158 181 263
Entity #7 | Chains: F
40S RIBOSOMAL PROTEIN S5 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 69 77 499
95 % 69 77 676
90 % 69 77 708
70 % 81 92 627
50 % 156 182 228
40 % 156 182 242
30 % 156 182 257
Entity #8 | Chains: G
40S RIBOSOMAL PROTEIN S6 protein, length: 249 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 75 523
95 % 69 76 692
90 % 69 76 723
70 % 74 82 701
50 % 144 163 300
40 % 148 168 300
30 % 148 168 323
Entity #9 | Chains: H
40S RIBOSOMAL PROTEIN S7 protein, length: 194 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 68 75 522
95 % 69 76 697
90 % 69 76 732
70 % 69 77 756
50 % 150 169 279
40 % 150 169 295
30 % 153 172 297

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures