Sequence Similarity Clusters for the Entities in PDB 4D0M

Entity #1 | Chains: A,C,G,I,M,O,Q,S,W,Y,c,g
PHOSPHATIDYLINOSITOL 4-KINASE BETA protein, length: 566 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 4655
95 % 9 9 3533 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 12 12 3008
70 % 12 12 3082
50 % 12 12 3108
40 % 12 12 3084
30 % 12 12 3070
Entity #2 | Chains: B,D,H,J,N,P,R,T,X,Z,d,h
RAS-RELATED PROTEIN RAB-11A protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 2298
95 % 11 11 2696 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.4
PDBFlex
90 % 14 14 2327
70 % 42 42 660
50 % 120 120 209
40 % 176 177 165
30 % 632 655 19
Entity #3 | Chains: E,F,K,L,U,V,a,b,e,f,i,j
RAB11 FAMILY-INTERACTING PROTEIN 3 protein, length: 48 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 6117
95 % 1 1 7164 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.3
PDBFlex
90 % 1 1 7721
70 % 1 1 7034
50 % 1 1 7089
40 % 1 1 6837
30 % 1 1 6111

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures