Sequence Similarity Clusters for the Entities in PDB 4D07

Entity #1 | Chains: A
DYNEIN LIGHT CHAIN 2, CYTOPLASMIC protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 5 7759
95 % 6 30 718 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.6
PDBFlex
90 % 6 31 726
70 % 8 33 707
50 % 10 35 717
40 % 10 35 745
30 % 10 35 788
Entity #2 | Chains: B
MYOSIN VA VARIANT protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 83863
95 % 1 1 58687
90 % 1 1 55385
70 % 1 1 48193
50 % 1 1 41574
40 % 1 1 37561
30 % 1 1 33061

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures