Sequence Similarity Clusters for the Entities in PDB 4CKK

Entity #1 | Chains: A,B,C,D
DNA GYRASE SUBUNIT A protein, length: 493 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 5222
95 % 1 6 5826 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.0
PDBFlex
90 % 1 6 5869
70 % 1 7 4975
50 % 2 57 412
40 % 2 58 433
30 % 2 58 450

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 4CKK 1 A, B, C, D DNA GYRASE SUBUNIT A 55 KDA N-TERMINAL DOMAIN, RESIDUES 30-522 562 5.6.2.2 | Details
2 4CKL 1 A, B DNA GYRASE SUBUNIT A 55 KDA N-TERMINAL DOMAIN, RESIDUES 30-522 562 5.6.2.2 | Details
3 2Y3P 1 A, B DNA GYRASE SUBUNIT A COMPRISES RESIDUES 2-523 OF WILD TYPE SEQUENCE N-TERMINAL 59KDA DOMAIN, RESIDUES 2-523 562 5.6.2.2 | Details
4 1AB4 1 A GYRASE A 59KDA FRAGMENT 562 5.6.2.2 | Details
5 3LPX 1 A, B DNA gyrase, A subunit N-terminal fragment 28229 5.6.2.2 | Details
6 3NUH 1 A DNA gyrase subunit A unp residues 1-525 562 5.6.2.2 | Details
7 4TMA 1 A, C, E, G DNA gyrase subunit A UNP residues 1-525 562 5.6.2.2 | Details