Sequence Similarity Clusters for the Entities in PDB 4CH8

Entity #1 | Chains: A,C,E,G
THROMBIN, LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 136 349 53
95 % 99 285 125 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 99 285 130
70 % 99 277 151
50 % 99 277 172
40 % 99 277 183
30 % 99 277 196
Entity #2 | Chains: B,D,F,H
THROMBIN, HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 117 298 99
95 % 139 362 79 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 0.6
PDBFlex
90 % 137 360 83
70 % 139 391 81
50 % 139 391 103
40 % 139 393 121
30 % 908 1950 6
Entity #3 | Chains: P,Q,R,S
PLATELET GLYCOPROTEIN IB ALPHA CHAIN, RESIDUES 287-300 protein, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures