4CFH

Structure of an active form of mammalian AMPK


Sequence Similarity Clusters for the Entities in PDB 4CFH

Entity #1 | Chains: A
5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 protein, length: 493 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79031
95 % 11 14 6023
90 % 1 1 46679
70 % 16 23 2694
50 % 16 23 2736
40 % 16 23 2741
30 % 16 23 2749
Entity #2 | Chains: B
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 9497
95 % 9 9 10312
90 % 9 9 10235
70 % 10 10 9106
50 % 10 10 8478
40 % 10 10 8132
30 % 10 10 7605
Entity #3 | Chains: C
5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79363
95 % 1 1 49252
90 % 1 1 46678
70 % 1 1 40932
50 % 1 1 35429
40 % 1 1 32007
30 % 1 1 28294
Entity #4 | Chains: E
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1 protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 21 3115
95 % 27 34 1740
90 % 27 34 1774
70 % 27 34 1822
50 % 27 34 1874
40 % 27 34 1904
30 % 37 44 1386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2V8Q 2 B 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 RESIDUES 187-272 9606
2 4EAI 2 B 5'-AMP-activated protein kinase subunit beta-2 UNP residues 189-272 9606
3 2V92 2 B 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 RESIDUES 187-272 9606
4 4EAJ 2 B 5'-AMP-activated protein kinase subunit beta-2 UNP residues 189-272 9606
5 2YA3 2 B 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 RESIDUES 187-272 9606
6 2Y8L 2 B 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 RESIDUES 187-272 9606
7 2V9J 2 B 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 RESIDUES 187-272 9606
8 2Y8Q 2 B 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 RESIDUES 187-272 9606
9 4CFH 2 B 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 RESIDUES 187-272 9606