4CFH

Structure of an active form of mammalian AMPK


Sequence Similarity Clusters for the Entities in PDB 4CFH

Entity #1 | Chains: A
5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 protein, length: 493 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79031
95 % 11 14 6023
90 % 1 1 46679
70 % 16 23 2694
50 % 16 23 2736
40 % 16 23 2741
30 % 16 23 2749
Entity #2 | Chains: B
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 9497
95 % 9 9 10312
90 % 9 9 10235
70 % 10 10 9106
50 % 10 10 8478
40 % 10 10 8132
30 % 10 10 7605
Entity #3 | Chains: C
5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79363
95 % 1 1 49252
90 % 1 1 46678
70 % 1 1 40932
50 % 1 1 35429
40 % 1 1 32007
30 % 1 1 28294
Entity #4 | Chains: E
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1 protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 21 3115
95 % 27 34 1740
90 % 27 34 1774
70 % 27 34 1822
50 % 27 34 1874
40 % 27 34 1904
30 % 37 44 1386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5ISO 1 A, C 5'-AMP-activated protein kinase catalytic subunit alpha-2 9606 2.7.11.1 | Details
2 6C9G 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1,5'-AMP-activated protein kinase catalytic subunit alpha-1 9606 2.7.11.1 | Details
3 6B1U 1 A, C 5'-AMP-activated protein kinase catalytic subunit alpha-2 9606 2.7.11.1 | Details
4 6C9H 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 9606 2.7.11.1 | Details
5 6C9F 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1,5'-AMP-activated protein kinase catalytic subunit alpha-1 9606 2.7.11.1 | Details
6 6C9J 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 9606 2.7.11.1 | Details
7 4CFE 1 A, C 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-2 A 172 THR AND C 172 THR ARE PHOSPHORYLATED. 9606 2.7.11.1 | Details
8 5EZV 1 A, C 5'-AMP-activated protein kinase catalytic subunit alpha-2/alpha-1 RIM SWAP chimera 9606 2.7.11.1 | Details
9 4ZHX 1 A, C 5'-AMP-activated protein kinase catalytic subunit alpha-2 9606 2.7.11.1 | Details
10 5UFU 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
11 6E4U 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
12 6E4W 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
13 4QFR 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 AMPK alpha 1 10116 2.7.11.1 | Details
14 5T5T 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
15 6E4T 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
16 4CFH 1 A 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 PROTEASE RECOGNITION SITES WERE ENGINEERED INTO THE ALPHA SUBUNIT AT BOTH ENDS OF A LARGE FLEXIBLE LOOP IN THE C-TERMINAL REGION (RESIDUES 470 TO 524), RESIDUES 471 TO 523 WERE REMOVED FROM THE PROTEIN, RESIDUES 523 TO 548 ARE GIVEN AS CHAIN C RESIDUES 13-481 10116 2.7.11.1 | Details
17 5KQ5 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
18 4QFG 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 AMPK alpha1 10116 2.7.11.1 | Details
19 4QFS 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 AMPK alpha 1 10116 2.7.11.1 | Details
20 4CFF 1 A, C 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-2 A 172 THR AND C 172 THR ARE PHOSPHORYLATED. 9606 2.7.11.1 | Details
21 4RER 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 Human AMPK alpha1 subunit [G11-Q550] 9606 2.7.11.1 | Details
22 6B2E 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-2 9606 2.7.11.1 | Details
23 4REW 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 Human AMPK alpha1 subunit [G11-Q550] 9606 2.7.11.1 | Details