4CFH

Structure of an active form of mammalian AMPK


Sequence Similarity Clusters for the Entities in PDB 4CFH

Entity #1 | Chains: A
5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 protein, length: 493 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79366
95 % 11 14 6000
90 % 1 1 46270
70 % 16 23 2705
50 % 16 23 2718
40 % 16 23 2747
30 % 16 23 2741
Entity #2 | Chains: B
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 9 9459
95 % 9 9 9706
90 % 9 9 9604
70 % 10 10 8290
50 % 10 10 7785
40 % 10 10 7483
30 % 10 10 7025
Entity #3 | Chains: C
5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 79365
95 % 1 1 57212
90 % 1 1 46265
70 % 1 1 40886
50 % 1 1 35108
40 % 1 1 31992
30 % 1 1 28073
Entity #4 | Chains: E
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1 protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 18 21 3139
95 % 27 34 1731
90 % 27 34 1769
70 % 27 34 1816
50 % 27 34 1862
40 % 27 34 1928
30 % 37 44 1384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5ISO 1 A, C 5'-AMP-activated protein kinase catalytic subunit alpha-2 9606 2.7.11.1 | Details
2 6C9G 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1,5'-AMP-activated protein kinase catalytic subunit alpha-1 9606 2.7.11.1 | Details
3 6B1U 1 A, C 5'-AMP-activated protein kinase catalytic subunit alpha-2 9606 2.7.11.1 | Details
4 6C9H 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 9606 2.7.11.1 | Details
5 6C9F 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1,5'-AMP-activated protein kinase catalytic subunit alpha-1 9606 2.7.11.1 | Details
6 6C9J 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 9606 2.7.11.1 | Details
7 4CFE 1 A, C 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-2 A 172 THR AND C 172 THR ARE PHOSPHORYLATED. 9606 2.7.11.1 | Details
8 5EZV 1 A, C 5'-AMP-activated protein kinase catalytic subunit alpha-2/alpha-1 RIM SWAP chimera 9606 2.7.11.1 | Details
9 4ZHX 1 A, C 5'-AMP-activated protein kinase catalytic subunit alpha-2 9606 2.7.11.1 | Details
10 5UFU 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
11 6E4U 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
12 6E4W 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
13 4QFR 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 AMPK alpha 1 10116 2.7.11.1 | Details
14 5T5T 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
15 6E4T 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
16 4CFH 1 A 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 PROTEASE RECOGNITION SITES WERE ENGINEERED INTO THE ALPHA SUBUNIT AT BOTH ENDS OF A LARGE FLEXIBLE LOOP IN THE C-TERMINAL REGION (RESIDUES 470 TO 524), RESIDUES 471 TO 523 WERE REMOVED FROM THE PROTEIN, RESIDUES 523 TO 548 ARE GIVEN AS CHAIN C RESIDUES 13-481 10116 2.7.11.1 | Details
17 5KQ5 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 10116 2.7.11.1 | Details
18 4QFG 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 AMPK alpha1 10116 2.7.11.1 | Details
19 4QFS 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 AMPK alpha 1 10116 2.7.11.1 | Details
20 4CFF 1 A, C 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-2 A 172 THR AND C 172 THR ARE PHOSPHORYLATED. 9606 2.7.11.1 | Details
21 4RER 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 Human AMPK alpha1 subunit [G11-Q550] 9606 2.7.11.1 | Details
22 6B2E 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-2 9606 2.7.11.1 | Details
23 4REW 1 A 5'-AMP-activated protein kinase catalytic subunit alpha-1 Human AMPK alpha1 subunit [G11-Q550] 9606 2.7.11.1 | Details