Sequence Similarity Clusters for the Entities in PDB 4CFH

Entity #1 | Chains: A
5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 protein, length: 493 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 78194
95 % 11 14 5926 Flexibility: Medium
Max RMSD: 11.9, Avg RMSD: 3.1
PDBFlex
90 % 1 1 46863
70 % 16 23 2647
50 % 16 23 2677
40 % 16 23 2694
30 % 16 23 2677
Entity #2 | Chains: B
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 9 9315
95 % 9 9 9946 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.1
PDBFlex
90 % 9 9 9856
70 % 10 10 8714
50 % 10 10 8123
40 % 10 10 7806
30 % 10 10 7287
Entity #3 | Chains: C
5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 protein, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 78545
95 % 1 1 48330
90 % 1 1 45763
70 % 1 1 40201
50 % 1 1 35037
40 % 1 1 31683
30 % 1 1 27997
Entity #4 | Chains: E
5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1 protein, length: 330 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 21 3052
95 % 27 34 1704 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.2
PDBFlex
90 % 27 34 1742
70 % 27 34 1776
50 % 27 34 1832
40 % 27 34 1866
30 % 37 44 1357

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures