Sequence Similarity Clusters for the Entities in PDB 4C3O

Entity #1 | Chains: A,C,E
HYDROGENASE-1 LARGE SUBUNIT protein, length: 585 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 34483
95 % 1 1 29309 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 25784
70 % 1 1 24562
50 % 31 32 1146
40 % 85 88 390
30 % 85 88 404
Entity #2 | Chains: B,D,F
HYDROGENASE-1 SMALL SUBUNIT protein, length: 279 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 32987
95 % 1 1 26681 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 25783
70 % 6 6 6441
50 % 6 6 6159
40 % 51 53 613
30 % 66 68 532

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures