Sequence Similarity Clusters for the Entities in PDB 4BPW

Entity #1 | Chains: A,C
DNA PRIMASE SMALL SUBUNIT protein, length: 423 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17408
95 % 12 14 3198 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.8
PDBFlex
90 % 12 14 3261
70 % 12 14 3282
50 % 12 14 3249
40 % 12 14 3229
30 % 14 16 2798
Entity #2 | Chains: B,D
DNA PRIMASE LARGE SUBUNIT protein, length: 253 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26357
95 % 2 2 24433 Flexibility: Low
Max RMSD: 2.3, Avg RMSD: 1.6
PDBFlex
90 % 2 3 15684
70 % 2 3 14773
50 % 2 3 13308
40 % 2 3 11263
30 % 2 3 10369

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures