Sequence Similarity Clusters for the Entities in PDB 4BDQ

Entity #1 | Chains: A,B
GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 2 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 22727
95 % 16 30 875 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.7
PDBFlex
90 % 16 30 911
70 % 38 90 301
50 % 115 297 55
40 % 117 300 72
30 % 118 303 74

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures