4B3P

Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface


Sequence Similarity Clusters for the Entities in PDB 4B3P

Entity #1 | Chains: A
REVERSE TRANSCRIPTASE/RIBONUCLEASE H protein, length: 560 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 77718
95 % 303 305 108
90 % 303 305 116
70 % 303 305 126
50 % 304 306 142
40 % 305 307 160
30 % 305 307 167
Entity #2 | Chains: B
P51 RT protein, length: 454 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 7 13666
95 % 297 299 115
90 % 297 299 121
70 % 297 299 133
50 % 298 300 150
40 % 299 301 166
30 % 299 301 173
Entity #3 | Chains: D
DNA dna, length: 29 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: R
RNA rna, length: 34 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures