4AQW

Model of human kinesin-5 motor domain (1II6, 3HQD) and mammalian tubulin heterodimer (1JFF) docked into the 9.5-angstrom cryo-EM map of microtubule-bound kinesin-5 motor domain in the rigor state.


Sequence Similarity Clusters for the Entities in PDB 4AQW

Entity #1 | Chains: A
TUBULIN ALPHA-1D CHAIN protein, length: 452 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 28 459
95 % 246 257 13
90 % 247 258 15
70 % 263 274 13
50 % 263 277 17
40 % 526 548 3
30 % 537 559 8
Entity #2 | Chains: B
TUBULIN BETA-2B CHAIN protein, length: 445 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 93 104 57
95 % 243 253 14
90 % 256 266 8
70 % 264 274 12
50 % 264 274 16
40 % 527 548 3
30 % 538 559 8
Entity #3 | Chains: C
KINESIN-LIKE PROTEIN KIF11 protein, length: 373 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 18313
95 % 54 54 502
90 % 54 54 526
70 % 54 54 556
50 % 57 58 569
40 % 107 111 382
30 % 149 154 239

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures