Sequence Similarity Clusters for the Entities in PDB 43CA

Entity #1 | Chains: A,C,E,G
PROTEIN (IMMUNOGLOBULIN (LIGHT CHAIN)) protein, length: 113 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10783
95 % 2 2 12055 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 4 5029
70 % 22 39 893
50 % 162 387 19
40 % 166 394 26
30 % 540 1251 5
Entity #2 | Chains: B,D,F,H
PROTEIN (IMMUNOGLOBULIN (HEAVY CHAIN)) protein, length: 117 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 10943
95 % 2 2 11738 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 10580
70 % 2 2 11070
50 % 372 825 5
40 % 372 841 5
30 % 541 1251 5

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures