Sequence Similarity Clusters for the Entities in PDB 3ZIA

Entity #1 | Chains: A,B,C,K,L,M
ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 13 582
95 % 1 15 592 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 1 15 622
70 % 10 60 181
50 % 12 81 169
40 % 12 81 182
30 % 12 81 190
Entity #2 | Chains: D,E,F,N,O,P
ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL protein, length: 478 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 14 496
95 % 1 15 594 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.0
PDBFlex
90 % 1 19 530
70 % 11 71 165
50 % 10 62 209
40 % 10 62 220
30 % 10 62 234
Entity #3 | Chains: G,Q
ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 2108
95 % 1 13 2382 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.2
PDBFlex
90 % 1 13 2443
70 % 1 13 2486
50 % 1 18 2081
40 % 10 59 832
30 % 10 72 695
Entity #4 | Chains: H,R
ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 13 1945
95 % 1 13 2504 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.8
PDBFlex
90 % 1 13 2582
70 % 1 13 2601
50 % 1 16 2324
40 % 1 16 2351
30 % 6 32 1488
Entity #5 | Chains: I,S
ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 2251
95 % 1 14 2407 Flexibility: Low
Max RMSD: 4.3, Avg RMSD: 1.8
PDBFlex
90 % 1 14 2468
70 % 1 14 2513
50 % 1 14 2519
40 % 1 14 2565
30 % 1 14 2537
Entity #6 | Chains: J,T
ATPASE INHIBITOR, MITOCHONDRIAL protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 49334
95 % 1 1 37706 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 35982
70 % 1 1 32140
50 % 1 1 28000
40 % 1 1 25350
30 % 1 1 22503

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures