Sequence Similarity Clusters for the Entities in PDB 3YGS

Entity #1 | Chains: C
APOPTOTIC PROTEASE ACTIVATING FACTOR 1 protein, length: 95 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 9 3394
95 % 5 9 4140 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 0.7
PDBFlex
90 % 5 9 4179
70 % 5 9 4178
50 % 5 9 4079
40 % 5 9 4015
30 % 5 9 3940
Entity #2 | Chains: P
PROCASPASE 9 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 17568
95 % 2 4 7079 Flexibility: No
Max RMSD: 0.7, Avg RMSD: 0.5
PDBFlex
90 % 2 4 7086
70 % 2 4 6970
50 % 2 4 6619
40 % 2 4 6405
30 % 2 4 6068

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures