Sequence Similarity Clusters for the Entities in PDB 3WTU

Entity #1 | Chains: A,F
Runt-related transcription factor 1 protein, length: 204 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 44288
95 % 4 7 5350 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.5
PDBFlex
90 % 4 7 5586
70 % 4 7 5521
50 % 4 7 5323
40 % 4 7 5179
30 % 4 7 4954
Entity #2 | Chains: B,G
Core-binding factor subunit beta protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 11 3473
95 % 5 13 3005 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.7
PDBFlex
90 % 5 13 3072
70 % 5 13 3092
50 % 5 13 3075
40 % 5 13 3059
30 % 5 13 3014
Entity #3 | Chains: C,H
Protein C-ets-1 protein, length: 166 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 3894
95 % 7 13 2746 Flexibility: Low
Max RMSD: 6.1, Avg RMSD: 1.5
PDBFlex
90 % 7 13 2773
70 % 7 13 2821
50 % 7 13 2839
40 % 7 13 2881
30 % 7 13 2823
Entity #4 | Chains: D,I
DNA (5'-D(*GP*AP*AP*GP*CP*CP*AP*CP*AP*TP*CP*CP*TP*CP*T)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: E,J
DNA (5'-D(*AP*GP*AP*GP*GP*AP*TP*GP*TP*GP*GP*CP*TP*TP*C)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures