Sequence Similarity Clusters for the Entities in PDB 3WMM

Entity #1 | Chains: C
Photosynthetic reaction center C subunit protein, length: 404 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 2 25374
95 % 2 3 16043
90 % 2 3 15731
70 % 2 3 14690
50 % 2 3 12945
40 % 2 3 11690
30 % 2 3 10122
Entity #2 | Chains: L
Photosynthetic reaction center L subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 10164
95 % 4 5 8863
90 % 4 5 8792
70 % 4 5 8456
50 % 123 129 350
40 % 123 129 376
30 % 123 129 376
Entity #3 | Chains: M
Photosynthetic reaction center M subunit protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 10072
95 % 4 5 8688
90 % 4 5 8623
70 % 4 5 8300
50 % 123 129 349
40 % 123 129 375
30 % 123 129 375
Entity #4 | Chains: H
Photosynthetic reaction center H subunit protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 10217
95 % 4 5 8961
90 % 4 5 8882
70 % 4 5 8536
50 % 4 5 7747
40 % 123 129 377
30 % 123 129 377
Entity #5 | Chains: 1,3,5,7,9,A,D,F,I,K,O,Q,S,U,W,Y
LH1 alpha polypeptide protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 236
95 % 3 4 334
90 % 3 4 355
70 % 3 4 389
50 % 3 4 457
40 % 3 4 494
30 % 3 4 495
Entity #6 | Chains: 0,2,4,6,8,B,E,G,J,N,P,R,T,V,X,Z
LH1 beta polypeptide protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 237
95 % 3 4 335
90 % 3 4 356
70 % 3 4 390
50 % 3 4 458
40 % 3 4 495
30 % 4 8 360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.