Sequence Similarity Clusters for the Entities in PDB 3WMM

Entity #1 | Chains: C
Photosynthetic reaction center C subunit protein, length: 404 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26111
95 % 2 3 16505 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 5.6
PDBFlex
90 % 2 3 16195
70 % 2 3 15126
50 % 2 3 13306
40 % 2 3 11999
30 % 2 3 10402
Entity #2 | Chains: L
Photosynthetic reaction center L subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10480
95 % 4 5 9098 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 4 5 9015
70 % 4 5 8660
50 % 123 129 379
40 % 123 129 402
30 % 123 129 404
Entity #3 | Chains: M
Photosynthetic reaction center M subunit protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10384
95 % 4 5 8923 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 4 5 8847
70 % 4 5 8507
50 % 123 129 378
40 % 123 129 401
30 % 123 129 403
Entity #4 | Chains: H
Photosynthetic reaction center H subunit protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10535
95 % 4 5 9198 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 4 5 9107
70 % 4 5 8742
50 % 4 5 7936
40 % 123 129 403
30 % 123 129 405
Entity #5 | Chains: 1,3,5,7,9,A,D,F,I,K,O,Q,S,U,W,Y
LH1 alpha polypeptide protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 249
95 % 3 4 342 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 3 4 364
70 % 3 4 399
50 % 3 4 469
40 % 3 4 508
30 % 3 4 509
Entity #6 | Chains: 0,2,4,6,8,B,E,G,J,N,P,R,T,V,X,Z
LH1 beta polypeptide protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 250
95 % 3 4 343 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 4 365
70 % 3 4 400
50 % 3 4 470
40 % 3 4 509
30 % 4 8 389

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures