Sequence Similarity Clusters for the Entities in PDB 3WMM

Entity #1 | Chains: C
Photosynthetic reaction center C subunit protein, length: 404 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 25699
95 % 2 3 16258 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 5.6
PDBFlex
90 % 2 3 15947
70 % 2 3 14886
50 % 2 3 13105
40 % 2 3 11824
30 % 2 3 10250
Entity #2 | Chains: L
Photosynthetic reaction center L subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10319
95 % 4 5 8984 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 4 5 8901
70 % 4 5 8555
50 % 123 129 356
40 % 123 129 380
30 % 123 129 379
Entity #3 | Chains: M
Photosynthetic reaction center M subunit protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10226
95 % 4 5 8810 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 4 5 8734
70 % 4 5 8401
50 % 123 129 355
40 % 123 129 379
30 % 123 129 378
Entity #4 | Chains: H
Photosynthetic reaction center H subunit protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 10374
95 % 4 5 9082 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 4 5 8991
70 % 4 5 8635
50 % 4 5 7832
40 % 123 129 381
30 % 123 129 380
Entity #5 | Chains: 1,3,5,7,9,A,D,F,I,K,O,Q,S,U,W,Y
LH1 alpha polypeptide protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 242
95 % 3 4 337 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 3 4 359
70 % 3 4 393
50 % 3 4 461
40 % 3 4 498
30 % 3 4 499
Entity #6 | Chains: 0,2,4,6,8,B,E,G,J,N,P,R,T,V,X,Z
LH1 beta polypeptide protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 4 243
95 % 3 4 338 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 3 4 360
70 % 3 4 394
50 % 3 4 462
40 % 3 4 499
30 % 4 8 367

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.