Sequence Similarity Clusters for the Entities in PDB 3WMM

Entity #1 | Chains: C
Photosynthetic reaction center C subunit protein, length: 404 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 3 17952
95 % 3 4 15611 Flexibility: Medium
Max RMSD: 5.6, Avg RMSD: 5.6
PDBFlex
90 % 3 4 15527
70 % 3 4 14522
50 % 3 4 12810
40 % 3 4 11498
30 % 3 4 9770
Entity #2 | Chains: L
Photosynthetic reaction center L subunit protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 8758
95 % 5 6 8508 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 5 6 8435
70 % 5 6 8124
50 % 124 131 392
40 % 124 131 421
30 % 124 131 418
Entity #3 | Chains: M
Photosynthetic reaction center M subunit protein, length: 325 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 8838
95 % 5 6 7980 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 1.4
PDBFlex
90 % 5 6 7905
70 % 5 6 7645
50 % 124 131 394
40 % 124 131 422
30 % 124 131 419
Entity #4 | Chains: H
Photosynthetic reaction center H subunit protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 7816
95 % 5 6 7894 Flexibility: Low
Max RMSD: 0.8, Avg RMSD: 0.8
PDBFlex
90 % 5 6 7824
70 % 5 6 7578
50 % 30 34 1602
40 % 124 131 423
30 % 124 131 421
Entity #5 | Chains: 1,3,5,7,9,A,D,F,I,K,O,Q,S,U,W,Y
LH1 alpha polypeptide protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 234
95 % 4 5 311 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 1.6
PDBFlex
90 % 4 5 321
70 % 4 5 372
50 % 4 5 437
40 % 4 5 468
30 % 4 5 475
Entity #6 | Chains: 0,2,4,6,8,B,E,G,J,N,P,R,T,V,X,Z
LH1 beta polypeptide protein, length: 47 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 5 235
95 % 4 5 312 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 4 5 322
70 % 4 5 373
50 % 4 5 438
40 % 4 5 469
30 % 5 9 360

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures