Sequence Similarity Clusters for the Entities in PDB 3W8J

Entity #1 | Chains: A,B
Protein disulfide-isomerase A6 protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 53676
95 % 1 1 37362 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 1 1 35707
70 % 1 2 25087
50 % 1 2 21128
40 % 4 15 2581
30 % 94 242 134
Entity #2 | Chains: C,D
C-terminal peptide from Peroxiredoxin-4 protein, length: 20 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 2 21468
95 % 2 2 20509
90 % 2 2 20059
70 % 2 2 18519
50 % 2 2 16501
40 % 2 2 15275
30 % 2 2 13853

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures