Sequence Similarity Clusters for the Entities in PDB 3VZD

Entity #1 | Chains: A,B,C,D,E,F
Sphingosine kinase 1 protein, length: 361 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 3098
95 % 3 5 3876 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 3 5 3948
70 % 3 5 3913
50 % 3 5 3735
40 % 3 5 3720
30 % 3 5 3711

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures