Sequence Similarity Clusters for the Entities in PDB 3VXO

Entity #1 | Chains: A,D
HLA class I histocompatibility antigen, A-24 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 18 29 1083
95 % 18 29 1469 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 242 349 40
70 % 582 835 6
50 % 589 849 7
40 % 637 906 8
30 % 643 931 13
Entity #2 | Chains: B,E
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 534 743 2
95 % 567 792 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 577 810 3
70 % 750 1114 4
50 % 764 1138 3
40 % 764 1138 4
30 % 764 1138 10
Entity #3 | Chains: C,F
10-mer peptide from Protein Nef protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures