Sequence Similarity Clusters for the Entities in PDB 3VXN

Entity #1 | Chains: A
HLA class I histocompatibility antigen, A-24 alpha chain protein, length: 275 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 29 1036
95 % 5 29 1423 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 93 336 40
70 % 238 822 6
50 % 238 827 8
40 % 246 871 9
30 % 246 895 12
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 100 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 227 708 2
95 % 251 757 2 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 255 773 3
70 % 287 1076 4
50 % 292 1100 4
40 % 292 1100 4
30 % 292 1100 7
Entity #3 | Chains: C
10-mer peptide from Protein Nef protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures