Sequence Similarity Clusters for the Entities in PDB 3VWJ

Entity #1 | Chains: A
Antigen-presenting glycoprotein CD1d protein, length: 284 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 11 4597
95 % 10 13 4172 Flexibility: Low
Max RMSD: 1.8, Avg RMSD: 1.0
PDBFlex
90 % 12 15 3602
70 % 12 15 3609
50 % 127 137 368
40 % 127 137 390
30 % 129 139 395
Entity #2 | Chains: B
Beta-2-microglobulin protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 675 717 2
95 % 722 765 3 Flexibility: Low
Max RMSD: 22.2, Avg RMSD: 0.9
PDBFlex
90 % 741 784 4
70 % 1029 1087 4
50 % 1049 1111 4
40 % 1049 1111 5
30 % 1049 1111 9
Entity #3 | Chains: C
NKT15 T cell receptor alpha-chain protein, length: 209 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 10 4222
95 % 7 11 4186 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 1.1
PDBFlex
90 % 7 11 4252
70 % 73 85 500
50 % 348 396 79
40 % 348 396 94
30 % 348 396 91
Entity #4 | Chains: D
NKT15 T cell receptor beta-chain protein, length: 246 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 9083
95 % 13 17 2693 Flexibility: Low
Max RMSD: 2.5, Avg RMSD: 1.5
PDBFlex
90 % 13 17 2761
70 % 336 379 45
50 % 355 405 69
40 % 355 405 86
30 % 355 405 87

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures