Sequence Similarity Clusters for the Entities in PDB 3VQ2

Entity #1 | Chains: A,B
Toll-like receptor 4 protein, length: 606 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 19013
95 % 1 3 16797 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.0
PDBFlex
90 % 2 6 7981
70 % 2 6 7489
50 % 4 9 4828
40 % 4 9 4708
30 % 4 9 4576
Entity #2 | Chains: C,D
Lymphocyte antigen 96 protein, length: 144 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 7407
95 % 2 6 7994 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 2 6 7814
70 % 2 6 7756
50 % 5 12 3659
40 % 5 12 3692
30 % 5 12 3614

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures