Sequence Similarity Clusters for the Entities in PDB 3VPB

Entity #1 | Chains: A,B,C,D
Putative acetylornithine deacetylase protein, length: 282 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 9740
95 % 1 2 12223 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.7
PDBFlex
90 % 1 2 11177
70 % 1 2 10734
50 % 1 2 9898
40 % 1 2 9388
30 % 1 6 3489
Entity #2 | Chains: E,F
Alpha-aminoadipate carrier protein lysW protein, length: 56 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58274
95 % 1 1 42866 Flexibility: No
Max RMSD: 0.1, Avg RMSD: 0.1
PDBFlex
90 % 1 1 40774
70 % 1 1 36068
50 % 1 1 31256
40 % 4 6 6669
30 % 4 6 6292

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures