Sequence Similarity Clusters for the Entities in PDB 3VI4

Entity #1 | Chains: A,C
Integrin alpha-5 protein, length: 632 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 20961
95 % 2 2 19881 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 2 2 19419
70 % 2 2 17981
50 % 4 9 5848
40 % 4 9 5802
30 % 4 12 4110
Entity #2 | Chains: B,D
Integrin beta-1 protein, length: 454 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26717
95 % 6 6 10398 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 6 6 10284
70 % 6 6 9937
50 % 6 6 9067
40 % 35 43 1038
30 % 35 43 1087
Entity #3 | Chains: E,L
SG/19 Fab fragment (Light chain) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26718
95 % 10 14 3833 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.3
PDBFlex
90 % 15 19 3007
70 % 1720 2416 2
50 % 2139 3067 2
40 % 2139 3067 2
30 % 4346 6228 1
Entity #4 | Chains: F,H
SG/19 Fab fragment (Heavy chain) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26719
95 % 2 2 20483 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 10 14 3245
70 % 2068 2965 1
50 % 2178 3117 1
40 % 2178 3117 1
30 % 4347 6228 1
Entity #5 | Chains: G,I
RGD peptide protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1YQV 2 H HyHEL-5 Antibody Heavy Chain IG*G1 FAB FRAGMENT (HY/HEL-5) 10090
2 2Q76 2 B, D Fab F10.6.6 fragment Heavy Chain domain VH and CH1 10090
3 1P2C 2 B, E heavy chain VH+CH1 anti-lysozyme antibody F10.6.6 10090
4 1MLB 2 B IGG1-KAPPA D44.1 FAB (HEAVY CHAIN) 10090
5 5NBW 2 B, H Fab 22F12 (A,B) 10090
6 1MLC 2 B, D IGG1-KAPPA D44.1 FAB (HEAVY CHAIN) 10090
7 1BQL 2 H HYHEL-5 FAB (HEAVY CHAIN) 10090
8 6EWB 2 E, G, H, J Fab heavy chain VHH 10090
9 3VI3 4 F, H SG/19 Fab fragment (Heavy chain) 10090
10 3VI4 4 F, H SG/19 Fab fragment (Heavy chain) 10090
11 2V7H 2 B, H MONOCLONAL ANTIBODY MONOCLONAL ANTIBODY AGAINST ALPHA-D-MANNOPYRANOSIDE FAB FRAGMENT HEAVY CHAIN 10090
12 3FMG 2 H Fab of neutralizing antibody 4F8, heavy chain 10090
13 2ZJS 3 H Fab56 (heavy chain) 10090
14 2IFF 2 H IGG1 HYHEL-5 FAB (HEAVY CHAIN) 10090