Sequence Similarity Clusters for the Entities in PDB 3VI4

Entity #1 | Chains: A,C
Integrin alpha-5 protein, length: 632 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26856
95 % 2 2 21017 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.1
PDBFlex
90 % 2 2 20504
70 % 2 2 18915
50 % 5 11 3999
40 % 5 11 3996
30 % 5 14 3104
Entity #2 | Chains: B,D
Integrin beta-1 protein, length: 454 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26857
95 % 6 6 10411 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 6 6 10332
70 % 6 6 9949
50 % 6 6 9088
40 % 35 43 1051
30 % 36 45 988
Entity #3 | Chains: E,L
SG/19 Fab fragment (Light chain) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 26858
95 % 10 14 3957 Flexibility: Low
Max RMSD: 4.4, Avg RMSD: 2.3
PDBFlex
90 % 15 19 3008
70 % 1722 2418 2
50 % 2141 3071 2
40 % 2141 3071 2
30 % 4350 6236 1
Entity #4 | Chains: F,H
SG/19 Fab fragment (Heavy chain) protein, length: 218 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 21023
95 % 2 2 19910 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 10 14 3245
70 % 2070 2969 1
50 % 2180 3121 1
40 % 2180 3121 1
30 % 4351 6236 1
Entity #5 | Chains: G,I
RGD peptide protein, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 5FFG 1 A Integrin alpha-V UNP residues 31-627 9606
2 4UM9 1 A, C INTEGRIN ALPHA-V HEADPIECE, RESIDUES 31-625 9606
3 3VI3 1 A, C Integrin alpha-5 UNP residues 42-664 9606
4 6OM1 1 A, C, E, G Integrin alpha-V 9606
5 3VI4 1 A, C Integrin alpha-5 9606
6 3V4V 1 A, C Integrin alpha-4 unp residues 34-620 9606
7 4IRZ 1 A Integrin alpha4 subunit 9986
8 6OM2 1 A, C Integrin alpha-V 9606
9 3V4P 1 A, C Integrin alpha-4 unp residues 34-620 9606
10 5FFO 1 A, E Integrin alpha-V UNP residues 31-627 9606
11 5NER 5 A Integrin alpha-V 9606
12 5NET 5 A Integrin alpha-V 9606
13 5NEU 5 A Integrin alpha-V 9606
14 5NEM 5 A Integrin alpha-V 9606